LimsPulse
Bioanalytical

Capillary electrophoresis system

Separates charged molecules in a thin fused-silica capillary under a high voltage (typically up to 30 kV). Used in biologics QC for size purity (CE-SDS), charge variants (cIEF, CZE) and glycan analysis.

  • Biotechnology
  • Biopharmaceutical
  • Pharmaceutical
  • Genomics
  • Forensic science
  • Academic research
Photo of a Capillary electrophoresis system
Photo: Mark Pellegrini, CC BY-SA 3.0 (cropped), via Wikimedia Commons
TROUBLESHOOTING

Common problems, causes and fixes

Current drops to zero or is unstable
Likely causes
  • • Air bubble or blockage in the capillary
  • • Empty or wrong buffer vial
  • • Broken capillary
What to do
  • • Rinse the capillary at high pressure; degas buffers
  • • Check vial positions and fill volumes
  • • Replace the capillary
Migration times drift
Likely causes
  • • Buffer depletion
  • • Temperature not controlled
  • • Capillary surface change
What to do
  • • Replace buffer vials more often
  • • Verify cartridge temperature
  • • Recondition or replace the capillary
Broad or distorted peaks
Likely causes
  • • Joule heating from high current
  • • Sample salt too high
  • • Sample overloaded
What to do
  • • Lower voltage or buffer strength; check cooling
  • • Desalt or dilute samples
  • • Reduce injection time
Poor area precision
Likely causes
  • • Sample viscosity or temperature differences
  • • Evaporation from vials
  • • Electrokinetic injection bias
What to do
  • • Control sample temperature; use an internal standard
  • • Use caps and a cooled tray
  • • Prefer pressure injection where possible
No peaks
Likely causes
  • • Detector lamp off or failed
  • • Wrong polarity
  • • Capillary window misaligned
What to do
  • • Check lamp hours and energy
  • • Check method polarity
  • • Realign the cartridge window
In LimsPulse · Calibration Management

Keep every CE in control: usage logs, calibration and maintenance schedules, and automatic blocking of overdue instruments.

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